User: GENOMIC_region

Reputation:
0
Status:
New User
Last seen:
2 weeks, 6 days ago
Joined:
2 years ago
Email:
s************@ymail.com

Profile information, website and location are not shown for new users.

This helps us discourage the inappropriate use of our site.

Posts by GENOMIC_region

<prev • 27 results • page 1 of 3 • next >
0
votes
1
answer
123
views
1
answers
Comment: C: Genesis: doubts with admixMAPMM
... Thank you. That helps. Is `Stat joint` Joint.beta? (hopefully this is last question. :) ) ...
written 22 days ago by GENOMIC_region0
0
votes
1
answer
123
views
1
answers
Comment: C: Genesis: doubts with admixMAPMM
... Thank you very much for helping me with these doubts. :) Is it possible to have beta in this analysis? If so, then It would be great to see it in future releases. ...
written 24 days ago by GENOMIC_region0
0
votes
1
answer
123
views
1
answers
Comment: C: Genesis: doubts with admixMAPMM
... Hi, Thank you for clarifying. :) Sorry, for not being clearer regarding my doubt in data structure. `gds.afr` has certain attributes such as snp.id, position and position also, **genotype**. ``` gds.afr <- GdsGenotypeReader(gds, genotypeVar="dosage_afr") gds.afr File: /tmp/Rtmpt27CXN/file7 ...
written 27 days ago by GENOMIC_region0
0
votes
1
answer
123
views
1
answers
Comment: C: Genesis: doubts with admixMAPMM
... Hi, Thank you for clarifying. :) Sorry, for not being clearer regarding my doubt in data structure. `gds.afr` has certain attributes such as snp.id, position and position also, **genotype**. ``` gds.afr <- GdsGenotypeReader(gds, genotypeVar="dosage_afr") gds.afr File: /tmp/Rtmpt27CXN/file7 ...
written 27 days ago by GENOMIC_region0
0
votes
1
answer
123
views
1
answers
Comment: C: Genesis: doubts with admixMAPMM
... It's true that K-1 ancestries must be used in analysis, otherwise the matrix generated would be non-invertible. Example in manual (Page 5) uses three ancestries, that's why I used three in my data due to three-way admixture present in individuals. dosage_eur <- sample(0:2, nsnp*nsamp, repla ...
written 29 days ago by GENOMIC_region0
0
votes
1
answer
123
views
1
answers
Comment: C: Genesis: doubts with admixMAPMM
... Dear Stephanie, Thank you very much for your prompt and detailed reply. Can you please help with genotype variable in gds data structure (Question 2.a 2.b and 2.c)? Or, as stated: > The admixMapMM and admixMap functions will only use data from the > nodes you specify with the genotypeVar ...
written 29 days ago by GENOMIC_region0
6
votes
1
answer
123
views
1
answer
Genesis: doubts with admixMAPMM
... Hello devels/users, I'm interested in using GENESIS package for admixMapMM function to perform local ancestry association on data on a three-way admixed population. I've inferred local ancestry using RfmixV1. I know location of each SNP, name and per ancestry dosage (0,1,2) information per perso ...
genesis admixmap written 29 days ago by GENOMIC_region0 • updated 29 days ago by Stephanie M. Gogarten640
0
votes
1
answer
109
views
1
answers
Comment: C: HOW TO USE LIMMA PACKAGE
... Do you've case control study design? ...
written 8 weeks ago by GENOMIC_region0
0
votes
0
answers
48
views
0
answers
Parsing through snp matrix
... Hi All, I'm keen to use genegeneinteractionR package. For that data are read and a snp matrix is generated. When I try to run gene gene interaction I get error ``` GGI.res <- GGI(Y=Y, snpX=data$snpX, genes.info=data$genes.info,method="PCA") ``` Error: `Error in GGI(Y = Y, snpX = data$snpX, ...
snpmatrix ggi written 8 weeks ago by GENOMIC_region0
0
votes
0
answers
175
views
0
answers
Comment: C: WGCNA: cleaning for sample outliers
... Hi Lluis,   Thank you very much. That helps. :) ...
written 4 months ago by GENOMIC_region0

Latest awards to GENOMIC_region

Voter 6 months ago, voted more than 100 times.
Supporter 11 months ago, voted at least 25 times.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 177 users visited in the last hour