User: alongalor

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alongalor10
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6 months, 1 week ago
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1 year, 11 months ago
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Posts by alongalor

<prev • 7 results • page 1 of 1 • next >
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Comment: C: GOTHiC's GOTHiC's function fails with bwa input
... Appears it only supports bowtie (I conclude after running an additional test)? Clearly this package is incredibly useful, but how can it be that it is so widely used but there is no documentation or discussion on the support thread regarding obvious things like this? ...
written 6 months ago by alongalor10
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Comment: C: GOTHiC's GOTHiC's function fails with bwa input
... Ok I am now getting the same error using bowtie2-aligned bams: Pairing reads Error in .Call2("solve_user_SEW0", start, end, width, PACKAGE = "IRanges") : solving row 67984077: range cannot be determined from the supplied arguments (too many NAs) Calls: GOTHiC ... GRanges -&gt; new_GRa ...
written 6 months ago by alongalor10
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GOTHiC's GOTHiC's function fails with bwa input
... Nowhere in the documentation does the GOTHiC function explicitly state that it only takes bowtie files as input. Please make note of this. I tried to feed in bwa-aligned bams and the tool failed. Thanks for your help and efforts. ...
gothic written 6 months ago by alongalor10
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Comment: C: Cannot Install BSgenome.Hsapiens.UCSC.hg19
... You guys are unreal! Cant believe it finally worked! Thanks a ton for the help! ...
written 23 months ago by alongalor10
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Comment: C: Cannot Install BSgenome.Hsapiens.UCSC.hg19
... Hi Hervé! Thanks so much for your help! I followed the instructions in the article you provided and managed to install rtracklayer: > library(rtracklayer) Loading required package: GenomicRanges Loading required package: GenomeInfoDb   But unfortunately I still run into an error when attempt ...
written 23 months ago by alongalor10
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Answer: A: Cannot Install BSgenome.Hsapiens.UCSC.hg19
... removeddddd ...
written 23 months ago by alongalor10
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Cannot Install BSgenome.Hsapiens.UCSC.hg19
... Hi friends! Am having some trouble installing BSgenome.Hsapiens.UCSC.hg19! When executing the following command > biocLite("BSgenome.Hsapiens.UCSC.hg19") I get an error: "installation of package ‘BSgenome.Hsapiens.UCSC.hg19’ had non-zero exit status" I followed the instructions offered in sev ...
software error package installation written 23 months ago by alongalor10

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