User: anne-kristin.stavrum

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Posts by anne-kristin.stavrum

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Comment: C: Significant DMRs in genes with no single significant CpG using limma
... Thank you very much for your reply. This makes sense. I used the default settings for DMRcate. Do you consider all reported DMRs significant, or do you recommend using the Stouffer value (<0.05?) to select the significant DMRs? Thanks again, Anne-Kristin ...
written 3 months ago by anne-kristin.stavrum0
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Significant DMRs in genes with no single significant CpG using limma
... I have analysed my data (from the Epic Illumina array), using limma to find single differentially methylated CpGs (DMPs), and DMRcate to find DMRs. The data and the model is exactly the same for both analyses; using no intercept and specifying a contrast of interest. When I compare the lists of ge ...
dmrcate written 3 months ago by anne-kristin.stavrum0 • updated 3 months ago by Tim Peters80

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