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Posts by anne-kristin.stavrum
... Thank you very much for your reply. This makes sense. I used the default settings for DMRcate. Do you consider all reported DMRs significant, or do you recommend using the Stouffer value (<0.05?) to select the significant DMRs? Thanks again, Anne-Kristin ...
... I have analysed my data (from the Epic Illumina array), using limma to find single differentially methylated CpGs (DMPs), and DMRcate to find DMRs. The data and the model is exactly the same for both analyses; using no intercept and specifying a contrast of interest. When I compare the lists of ge ...
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