User: Antonio M.

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Antonio M.0
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Posts by Antonio M.

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About the meaning of the value column in minfi package
... Hi. I asked this a long time ago but i didn't understand very well. Can someone tell me the meaning of the sign in the "value" column in the bumphunter output included in minfi? I have this matrix:  g <- as.factor(c(rep("c", 17), rep("t", 40))) # c for controls vs t for tumors matriz <- mo ...
minfi methylation written 2.2 years ago by Antonio M.0
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Comment: C: Meaning of the value column in bumphunter output (minfi package)
... Thank you very much. ...
written 2.4 years ago by Antonio M.0
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Comment: C: Meaning of the value column in bumphunter output (minfi package)
... I have this. g <- as.factor(c(rep("c", 17), rep("t", 40))) # c for controls vs t for tumors matriz <- model.matrix(~ g) # The design matrix The output after bumphunter: head(dmrs$table) chr start end value area cluster indexStart indexEnd L clusterL p.value fwer ...
written 2.4 years ago by Antonio M.0
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Meaning of the value column in bumphunter output (minfi package)
... Hi everyone. In the documentation, the value column in minfi::bumphunter output is the average difference level of methylation in the bump. My question is, does this mean that the methylation levels are greater in for example, controls? (If we are comparing control vs case) . How can I know the me ...
minfi bumphunter written 2.4 years ago by Antonio M.0 • updated 19 months ago by src30

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