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Posts by inah
... Hi, I have been using featureCounts to obtain both exon- and gene-level read counts (reads were aligned with STAR). For one particular gene (ARID5B, which has 12 exons, 5 unique to one isoform, 2 unique to another isoform and 5 shared), I find that the read count summed over the 12 exons is greate ...
... Hi, I want to obtain read counts at the exon level using featureCounts. I run Rsubread and use these options: annot.ext="/home/inah/RefGTF/GRCh38/annotation/Homo_sapiens.GRCh38.85.gtf", isGTFAnnotationFile=TRUE, GTF.featureType="exon", GTF.attrType="exon_id", useMetaFeatures=FALSE The resulti ...
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