User: ankita.mandal28529

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Posts by ankita.mandal28529

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Comment: C: Subset of genes can find a term but whole set cannot
... My code:   library(DOSE) library(biomaRt) ensembl=useEnsembl(biomart="ensembl",dataset="hsapiens_gene_ensembl",version=89) geneId<-readLines("First_100_Selected_Gene_name.txt")   try(entrez_gene<-getBM(attributes=c('entrezgene'),filters='hgnc_symbol',values=geneId,mart=ensembl)) write.table( ...
written 2.3 years ago by ankita.mandal285290
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Subset of genes can find a term but whole set cannot
... I have a set of genes and I want to find out disease ontology term from that set. I have used DOSE and biomaRt R package. If I put a subset of genes, I can get a significant term but if I put the whole set of genes, that term is missing. Is it possible? Or, I have made any mistake? ...
biomart dose written 2.3 years ago by ankita.mandal285290 • updated 2.3 years ago by James W. MacDonald51k

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