User: Luiz

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Luiz0
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Brazil
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5 months, 2 weeks ago
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Posts by Luiz

<prev • 4 results • page 1 of 1 • next >
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Problem with heatmap by ComplexHeatmap
... Good morning! I'm trying to produce a heatmap only with my DGE from NOISeq. I'm working with ComplexHeatmap, and already produced a nice looking heatmap with annotations (pipeline below) but,  the heatplot produced utilize random transcripts between 1 and 1324 (my number of DGE) even if they're no ...
noiseq rstudio complexheatmap written 9 weeks ago by Luiz0
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Multiple samples on the same graph
... Hi, good morning! I hope you have a nice weekend. I'm working on pathview today and i can't put different matrixes on the graph to compare. Only one is working and my version is 1.14.0. Already run the demo code and everything is fine accord with vignette. I'm trying to do this : https://biocondu ...
probe pathview written 4 months ago by Luiz0 • updated 4 months ago by Luo Weijun1.4k
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Comment: C: Inverse logFC on DESeq2 Rstudio
... Thank you Gavin!! My summary before was out of 20088 with nonzero total read count adjusted p-value < 0.05 LFC > 0 (up)     : 17, 0.085%  LFC < 0 (down)   : 12, 0.06%  outliers [1]     : 48, 0.24%  low counts [2]   : 7006, 35%  (mean count < 9) [1] see 'cooksCutoff' argument of ?result ...
written 5 months ago by Luiz0
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Inverse logFC on DESeq2 Rstudio
... Hi I'm trying to work with DESeq2, i already worked with edgeR and DESeq1 with relatively sucess. They give me the same results as logFC (+ or -) but, when i work with DESeq2, i have different results. Every gene who are positive for edgeR and DESeq1 are negative for DESeq2 and vice-versa. DESeq2 ...
deseq2 written 5 months ago by Luiz0 • updated 5 months ago by Michael Love15k

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