User: bh129

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bh12930
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Posts by bh129

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Comment: C: DESeqDataSetFromTximport with kallisto abundances.
... > biocValid() * sessionInfo() R version 3.4.0 (2017-04-21) Platform: x86_64-pc-linux-gnu (64-bit) Running under: Ubuntu 14.04.5 LTS Matrix products: default BLAS: /usr/lib/libblas/libblas.so.3.0 LAPACK: /usr/lib/lapack/liblapack.so.3.0 locale: [1] LC_CTYPE=en_GB.UTF-8 LC_NUMERIC=C ...
written 5 months ago by bh12930
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DESeqDataSetFromTximport with kallisto abundances.
... Hi, I'm trying to use DESeq2 to analyse a dataset where I've generated abundances using Kallisto following the vignette "Analyzing RNA-seq data with DESeq2". I'm getting a consistent error with DESeqDataSetFromTximport: > dds <- DESeqDataSetFromTximport(txi.kallisto, samples, ~condition) E ...
deseq2 tximport written 5 months ago by bh12930 • updated 6 weeks ago by Ming Wang0

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