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User: mmfansler

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mmfansler0
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Posts by mmfansler

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Comment: C: Is BiocInstaller::biocLite incompatible with withr::with_makevars?
... Good catch on the outdated devtools::install_bioc! I did think referencing the deprecated SVN was odd, but didn't check the version. I cloned the Rhtslib repo. First, just to confirm the issue is with Rhtslib and not biocLite, I attempted using with_makevars on install.packages("local/Rhtslib", typ ...
written 5 months ago by mmfansler0
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Is BiocInstaller::biocLite incompatible with withr::with_makevars?
... When compiling cram/cram_io.c during installation of Rhtslib, I recieved the following error: cram/cram_io.c:57:19: fatal error: bzlib.h: No such file or directory #include <bzlib.h> Usually, I can resolve such compiler/linker errors (arising from install.packages) using withr::with_makevars ...
biocinstaller bioclite package installation rhtslib withr written 5 months ago by mmfansler0 • updated 5 months ago by Martin Morgan ♦♦ 22k

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