User: chirag.parsania

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Posts by chirag.parsania

<prev • 21 results • page 1 of 3 • next >
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Comment: C: OrgDB download failed via AnnotationHub
... Thanks @Martin. You reduced significant chunk of the code. Cheers, Chirag. ...
written 7 weeks ago by chirag.parsania0
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Comment: C: OrgDB download failed via AnnotationHub
... Dear abelew, Thanks so much for clarifying all my doubts. I am not in a hurry to get GOSLIM data. I can wait till next round of OrgDb creations. Thanks, Chirag. ...
written 7 weeks ago by chirag.parsania0
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Comment: C: OrgDB download failed via AnnotationHub
... Hi abelew, Thanks for clarifications. Another question I have is regarding GO data given in the OrgDB object. As you say, OrgDb generated from version 45 (which is also current online version of FungiDB), why the genes annotated to GO terms are drastically different. See the example below. I f ...
written 8 weeks ago by chirag.parsania0
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Comment: C: OrgDB download failed via AnnotationHub
... Hi Shepherl, Sorry for bothering you again. I find some version discrepancy in the data given by FungiDb. Look at the example below. I compare the version given in the `sourceurl` column and `genome` column. They are not agreeing with each other and therefore I am confused that the given annota ...
written 8 weeks ago by chirag.parsania0
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Comment: C: OrgDB download failed via AnnotationHub
... Thanks a lot. I will look in to that ...
written 8 weeks ago by chirag.parsania0
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Comment: C: OrgDB download failed via AnnotationHub
... Thanks a lot. I will look in to that ...
written 8 weeks ago by chirag.parsania0
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Comment: C: OrgDB download failed via AnnotationHub
... Thanks for updates. Looking forward. ...
written 9 weeks ago by chirag.parsania0
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Comment: C: OrgDB download failed via AnnotationHub
... Hi Shepherl, Just a reminder if there is any update on `AnnotationHub` regarding data from `EuPathDb`. Chirag. ...
written 10 weeks ago by chirag.parsania0
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Comment: C: OrgDB download failed via AnnotationHub
... Ok. Thanks.! >Temporarily we will be removing the resources from the database and re-entering a clean set to hopefully remedy the issue Regarding to above comment, can you please update here once database updated ? Thanks a lot. ...
written 3 months ago by chirag.parsania0
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Comment: C: OrgDB download failed via AnnotationHub
... One more thing I would like to get here is, the `AnnotationHub::snapshotDate()` The timestamp of [online version of annotationHub][1] is `2019-08-02 12:51:11 +0000`. However, when i run locally - `AnnotationHub::snapshotDate()` time stamp is `snapshotDate(): 2019-05-02`. i wonder why this discrep ...
written 3 months ago by chirag.parsania0

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