User: chirag.parsania

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Posts by chirag.parsania

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Comment: C: OrgDB download failed via AnnotationHub
... Thanks for updates. Looking forward. ...
written 5 days ago by chirag.parsania0
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Comment: C: OrgDB download failed via AnnotationHub
... Hi Shepherl, Just a reminder if there is any update on `AnnotationHub` regarding data from `EuPathDb`. Chirag. ...
written 8 days ago by chirag.parsania0
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Comment: C: OrgDB download failed via AnnotationHub
... Ok. Thanks.! >Temporarily we will be removing the resources from the database and re-entering a clean set to hopefully remedy the issue Regarding to above comment, can you please update here once database updated ? Thanks a lot. ...
written 4 weeks ago by chirag.parsania0
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Comment: C: OrgDB download failed via AnnotationHub
... One more thing I would like to get here is, the `AnnotationHub::snapshotDate()` The timestamp of [online version of annotationHub][1] is `2019-08-02 12:51:11 +0000`. However, when i run locally - `AnnotationHub::snapshotDate()` time stamp is `snapshotDate(): 2019-05-02`. i wonder why this discrep ...
written 5 weeks ago by chirag.parsania0
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Comment: C: OrgDB download failed via AnnotationHub
... Other than download, one more thing I would like to add is, no data given for species Candida glabrata. Though it is present in fungiDB online version ...
written 9 weeks ago by chirag.parsania0
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Comment: C: OrgDB download failed via AnnotationHub
... Thanks shepherl. `ah[["AH70681"]]` working perfectly fine. However, the above 14 I mentioned are still failing to download. Below is the summary table, showing fungidb provided OrgDB and GRanges failed downloads # A tibble: 14 x 7 genome species ...
written 9 weeks ago by chirag.parsania0
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Comment: C: OrgDB download failed via AnnotationHub
... Total failed downloads of GRanges, provided by fungidb. fpath: ‘https://annotationhub.bioconductor.org/fetch/77428’ fpath: ‘https://annotationhub.bioconductor.org/fetch/77429’ fpath: ‘https://annotationhub.bioconductor.org/fetch/77448’ fpath: ‘https://annotationhub.biocondu ...
written 9 weeks ago by chirag.parsania0
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Comment: C: OrgDB download failed via AnnotationHub
... Different error with different AH id hub[["AH71458"]] downloading 0 resources loading from cache ‘AH71458 : 78204’ Error: failed to load resource name: AH71458 title: Transcript information for Coprinopsis cinerea okayama7 130 reason: database disk image ...
written 9 weeks ago by chirag.parsania0
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Comment: C: OrgDB download failed via AnnotationHub
... Hi, I encountered same error i reported before, but with different AH id loading from cache ‘AH70681 : 77427’ downloading 1 resources retrieving 1 resource Downloading: 240 B Error: failed to load resource name: AH70682 title: Transcript information ...
written 9 weeks ago by chirag.parsania0
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Comment: C: OrgDB download failed via AnnotationHub
... Thanks a lot. I will post here if any difficulty encountered, ~C. ...
written 10 weeks ago by chirag.parsania0

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