User: manish20072013

Reputation:
0
Status:
New User
Last seen:
1 year, 9 months ago
Joined:
1 year, 10 months ago
Email:
m*************@gmail.com

Profile information, website and location are not shown for new users.

This helps us discourage the inappropriate use of our site.

Posts by manish20072013

<prev • 4 results • page 1 of 1 • next >
0
votes
1
answer
358
views
1
answer
RNAseq Analysis using RUVs
... I have three groups each have 4 replicates. The conditions for each group were same before preparing library and then sequencing. Now I have to analyse the read counts to find DE genes between Group1 vs Group2, Group2 vs Group3 and Group1 vs Group3. But I do not know whether to combine all the grou ...
rnaseq ruvseq R written 22 months ago by manish200720130 • updated 22 months ago by davide risso810
0
votes
1
answer
295
views
1
answer
How to generate heatmap for three groups
... I have three groups let's say C, L, and T, each with three replicates. I did comparison between C vs L, C vs T, and L vs T to find the Deferentially expressed genes in each compassion. I used RUVs package to find the DE genes. I want to draw a heatmap of these differentially expressed genes, but I h ...
rnaseq ruvseq heatmap written 22 months ago by manish200720130 • updated 22 months ago by James W. MacDonald49k
0
votes
0
answers
297
views
0
answers
Differential expressed genes between different samples in RUVseq
... I have RNAseq read counts for three groups of sample, each with 3 replicates. I want to find the DE genes between Group 1 and Group 2, Group 2 and Group 3, and Group 1 and Group 3. Should I combine all the samples in one file and then perform the RUVs to normalize then get DE genes between two group ...
rnaseq R differential gene expression ruv written 22 months ago by manish200720130
2
votes
1
answer
496
views
1
answer
Decide normalisation method in RUVseq for RNAseq data
... Hello,  I have 2 groups and each group with 3 replicates. Each sample have 50686 genes with RNAseq read counts for each gene. I performed the following function in R to get the normalisation factors y <- calcNormFactors(y, method = "upperquartile") I got the following normalisation factors: g ...
rnaseq normalization edger ruvseq ruvnormalize written 22 months ago by manish200720130 • updated 22 months ago by davide risso810

Latest awards to manish20072013

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 255 users visited in the last hour