User: mdroog

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mdroog0
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Posts by mdroog

<prev • 8 results • page 1 of 1 • next >
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DESeq2: plotMA looks wrong
... I have single cell RNA seq data from two groups. When I use DESeq2 to explore differential regulation between the two groups, I visualize them in a plotMA graph. To my surprise this shows most genes are not around 0 for the y-axe (log2Fold) but -1. I added a link to the plot I made. What am I doing ...
deseq2 written 5 months ago by mdroog0 • updated 5 months ago by Wolfgang Huber13k
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Error: vector memory exhausted (limit reached?)
... Hi all,  I am experiencing difficulties. Ever since I installed the new version of R and RStudio I cannot get the next line to run. I hope someone can help me out. Best wishes, Marjolein.  > sc_all <- SCseq(input_merged_all)  Error: vector memory exhausted (limit reached?)   > sessionIn ...
software error written 11 months ago by mdroog0
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Unable to install the package "tissuesGeneExpression"
... I am trying to install a package so I can continue a bioconductor course. Unfortunately it's not working. I get the following line:   > source("https://bioconductor.org/biocLite.R") Bioconductor version 3.5 (BiocInstaller 1.26.0), ?biocLite for help > biocLite("tissuesGeneExpression") BioC_m ...
bioconductor written 23 months ago by mdroog0 • updated 23 months ago by Mike Smith3.7k
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Comment: C: Error message for installing DESeq2
... Yes, thank you. That was it indeed. Instead of the network drive, R is now running on the local D:\\ disk. This solved the problem. ...
written 23 months ago by mdroog0
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Comment: C: Error message for installing DESeq2
... I did but then I get the following messages: > source("https://bioconductor.org/biocLite.R") Bioconductor version 3.5 (BiocInstaller 1.26.0), ?biocLite for help > biocLite("GenomeInfoDb") BioC_mirror: https://bioconductor.org Using Bioconductor 3.5 (BiocInstaller 1.26.0), R 3.4.1 (2017-06-30 ...
written 23 months ago by mdroog0
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Error message for installing DESeq2
... Yesterday I managed to install DESeq2 on my home computer but today it simply won't work on my computer at work. I install it using the following command: source("https://bioconductor.org/biocLite.R") biocLite("DESeq2")   However, when I then use the command library(DESeq2) I get the following ...
deseq2 written 23 months ago by mdroog0 • updated 23 months ago by James W. MacDonald50k
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Answer: A: Error message that there is no package called Biobase
... Thanks, your solution was indeed what I needed.  ...
written 23 months ago by mdroog0
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Error message that there is no package called Biobase
... I am trying to learn bioconductor (as a wetlabber). I think it's super interesting. But allready at the base it is tough. I keep getting the following error: Error in library(Biobase) : there is no package called ‘Biobase’   Eventhough I did install Biobase. Can anybody tell me what is going wron ...
software error written 23 months ago by mdroog0

Latest awards to mdroog

Popular Question 11 months ago, created a question with more than 1,000 views. For Error message for installing DESeq2
Popular Question 11 months ago, created a question with more than 1,000 views. For Unable to install the package "tissuesGeneExpression"
Popular Question 11 months ago, created a question with more than 1,000 views. For Error message that there is no package called Biobase

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