User: nosheenfaiz09

Reputation:
0
Status:
New User
Location:
Last seen:
1 year, 2 months ago
Joined:
1 year, 3 months ago
Email:
n************@gmail.com

Posts by nosheenfaiz09

<prev • 11 results • page 1 of 2 • next >
0
votes
1
answers
1.3k
views
1
answers
Answer: A: converting fasta file into bam file
... Dear  b.nota  Thank you for your reply. Yes, you are right and I did alignment and saved it as bam file but now I DONT KNOW HOW TO GET COUNT MATRIX FROM THIS BAM FILE. ...
written 15 months ago by nosheenfaiz090
1
vote
0
answers
181
views
0
answers
count matrix from BAM file
... Hi there, Can anyone tell me how to get count matrix from BAM file in R? Thanks ...
count matrix written 15 months ago by nosheenfaiz090
0
votes
1
answers
1.3k
views
1
answers
Comment: C: converting fasta file into bam file
... Thank you yes fasta is Raw file file i have to covert fasta file into bam file so that i could align the sequences.. ...
written 15 months ago by nosheenfaiz090
0
votes
1
answer
1.3k
views
1
answer
converting fasta file into bam file
... Hi all, I am new in using bioconductor can anybody tell me how to convert fasta file into bam file?? can you provide me the code? many thanks ...
ngs written 15 months ago by nosheenfaiz090
0
votes
1
answers
548
views
1
answers
Comment: C: Problem in installing bioconductor
... This worked out source("http://bioconductor.org/biocLite.R") biocLite("Biostrings") require(Biostrings) filepath1 <- system.file("extdata", "someORF.fa", package="Biostrings") readDNAStringSet(filepath1) Now another problem is  source("http://bioconductor.org/biocLite.R") biocLite("Rsamtools") ...
written 15 months ago by nosheenfaiz090
0
votes
1
answers
548
views
1
answers
Comment: C: Problem in installing bioconductor
... source("http://bioconductor.org/biocLite.R") biocLite("Biostrings") library(Biostrings) filepath1 <- system.file("extdata", "someORF.fa", package="Biostrings") readDNAStringSet(filepath1) I tried this but not working ang says there is no Biostrings package ...
written 15 months ago by nosheenfaiz090
0
votes
1
answers
548
views
1
answers
Comment: C: Problem in installing bioconductor
... > filepath1 <- system.file("extdata", "someORF.fa", package="Biostrings") > readDNAStringSet(filepath1) Error in readDNAStringSet(filepath1) :    could not find function "readDNAStringSet" I dont know what going wrong. It is also not working. Please guide me I am not good in R thats why. ...
written 15 months ago by nosheenfaiz090
0
votes
1
answers
548
views
1
answers
Comment: C: Problem in installing bioconductor
...  myrawfile <- readRNAStringSet("abc.fasta") Error in .Call2("new_input_filexp", filepath, PACKAGE = "XVector") :    cannot open file 'abc.fasta' Thats why I am not able to read fasta file in R ...
written 15 months ago by nosheenfaiz090
0
votes
1
answers
548
views
1
answers
Comment: C: Problem in installing bioconductor
... I did but even afer installing Biostring i am getting this message > ?biostrings No documentation for ‘biostrings’ in specified packages and libraries: you could try ‘??biostrings’ ...
written 15 months ago by nosheenfaiz090
0
votes
1
answers
548
views
1
answers
Comment: C: Problem in installing bioconductor
... Thank you  I want to use Biostrings it gives this messsage and somtimes says that biostrings package not found. > biocLite("Biostrings") BioC_mirror: https://bioconductor.org Using Bioconductor 3.5 (BiocInstaller 1.26.0), R 3.4.1 (2017-06-30). Installing package(s) ‘Biostrings’ Warning: package ...
written 15 months ago by nosheenfaiz090

Latest awards to nosheenfaiz09

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.2.0
Traffic: 158 users visited in the last hour