User: macmanes

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macmanes0
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Posts by macmanes

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Comment: C: tximport error: all(names(aveLengthSampGene) == rownames(lengthMat)) is not TRUE
... Perfect! You rock! I had coded in 'NA' to fill missing values in the geneID column, which R (appropriately) sees as missing. Getting rid of those fixes the issue.  Thanks a bunch.  ...
written 4 months ago by macmanes0
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tximport error: all(names(aveLengthSampGene) == rownames(lengthMat)) is not TRUE
...   I'm having an error with the importing of Salmon data via tximport. txi.all <- tximport(all_files, type = "salmon", tx2gene = tx2gene) reading in files with read_tsv 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 ...
R bioconductor salmon tximport written 4 months ago by macmanes0 • updated 4 months ago by Michael Love15k

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