User: tirza.doniger

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Posts by tirza.doniger

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DESEQ2 Finding Unchanged Genes
... Hi,   I think I followed the correct steps to find significant unchanged genes between the conditions, but it returns no significant genes. What does that mean? Isn't the basic assumption of the analysis that most of the genes are unchanged? Version: DESeq2_1.20.0      Thanks! Tirza Doniger = ...
deseq2 differential gene expression written 7 months ago by tirza.doniger20 • updated 7 months ago by Michael Love23k
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Answer: A: ChipQC Error: first error: could not find function "seqlevels<-"
... Solved the problem: BiocParallel was not installed.   Thanks! ...
written 22 months ago by tirza.doniger20
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ChipQC Error: first error: could not find function "seqlevels<-"
... When I run on a sample individually it runs, but when I add the samplefile it ends in the error listed below. SessionInfo listed at the very bottom. Thanks so much, Tirza Doniger ++++++++++++++++++++ Code: samples = read.csv("chipQC_samples.csv") BlackListFile <- "mm10.blacklist.bed" examp ...
chipqc software error written 22 months ago by tirza.doniger20

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