User: arbet003

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arbet00310
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Posts by arbet003

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How to convert Illumina HumanMethylation27 BeadChip ID's to gene names?
... I have DNA Methylation data from GSE26126 (you can access the data here) which uses the Illumina HumanMethylation27 BeadChip technology.  Here is an example of what some of the gene IDs look like: "cg00027083" "cg00035347" "cg00446235" "cg00563845" "cg00955230" How do I convert these ID's into the ...
illumina methylation gene names convertids written 17 months ago by arbet00310 • updated 17 months ago by James W. MacDonald51k
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Comment: C: Need help loading gene expression data into R using either ArrayExpress or GEOqu
... For GEOquery, I tried the following: gdata <- getGEO('GSE72680', destdir=".") https://ftp.ncbi.nlm.nih.gov/geo/series/GSE72nnn/GSE72680/matrix/ Error in function (type, msg, asError = TRUE) : error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version I also tried ...
written 18 months ago by arbet00310
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Need help loading gene expression data into R using either ArrayExpress or GEOquery R packages
... I am trying to load gene expression and phenotype data into R from a particular study that can be accessed at the GEO database (id: GSE72680) or at the ArrayExpress database (id: E-GEOD-72680).  I have tried using both the GEOquery and ArrayExpress R packages to load this data into R but have been u ...
geneexpression geoquery arrayexpress written 18 months ago by arbet00310 • updated 18 months ago by Sean Davis21k
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How to map a SNP to all genes within 50kb (upstream or downstream) of the SNP?
... Hello, Are there any bioconductor R packages or functions that would allow me to map a SNP to all genes within 50kb (upstream or downstream) of the SNP? Thanks ...
snp annotation R written 2.3 years ago by arbet00310 • updated 2.3 years ago by James W. MacDonald51k

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