User: Jakob Petereit

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UWA Perth
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Posts by Jakob Petereit

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Answer: A: Load saved RangedSummarizedExperiment as Deseq2 dataset
... sweet, saveRDS works indeed very nicely here. I'll try the DESeqDataSetFromMatrix and DESeqDataSetFromHTSeqCount later on   Cheers for the help <3     ...
written 4 months ago by Jakob Petereit0
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Answer: A: Load saved RangedSummarizedExperiment as Deseq2 dataset
... It somehow works with save.image, to mirror my work space and then load it later on again. It would be still good to investigate the error or find a better way to save and load the SummarizedExperiment.  I plan to source the summary of the overlaps out to our in house unix-cluster, as summarizeOve ...
written 4 months ago by Jakob Petereit0
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Load saved RangedSummarizedExperiment as Deseq2 dataset
... Hi,   I am currently analyzing some RNAseq data. I worked my way through the RNAseq gene level workflow (https://www.bioconductor.org/help/workflows/rnaseqGene/)  And most things work well, and I will get it done in some time. The only really annoying thing is, that I cannot save and load my Rang ...

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