User: alex.gos90

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alex.gos9010
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Posts by alex.gos90

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large memory footprint with summarizeOverlaps method for BamViews
... Hello, I would like to point out, that when I use a BamViews object that was defined with a specific bamRanges with the summarizeOverlaps method, the whole Bam file is loaded into Memory, if I do not explicitly provide the param argument. Here is an example library(GenomicAlignments) tiny_bam &l ...
rsamtools genomicalignments summarizeoverlaps bamviews written 3 months ago by alex.gos9010 • updated 3 months ago by Martin Morgan ♦♦ 22k
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Comment: C: Gviz: Add label/title to GenomeAxisTrack
... Hi Robert, thank you very much, that was much easier than expected.  Best, Alex ...
written 5 months ago by alex.gos9010
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Gviz: Add label/title to GenomeAxisTrack
... Dear Gviz Developers, thank you for creating such a wonderful package.   I am working with the genome 'ce10', for which there is no cytoband data available at UCSC and therefore no IdeogramTrack is possible. Now I would like to know, whether it is possible to place a title or label to the left o ...
celegans gviz written 5 months ago by alex.gos9010 • updated 5 months ago by Robert Ivanek530
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Comment: C: Remote rejected after resetting to previous commit
... Hi, Thank you for your answer! As there were no issues with the code in it's current state I will ignore those duplicate commits,  but definitely will pay more attention when updating the repo.    ...
written 5 months ago by alex.gos9010
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DEP: Grouping Samples for missing value imputation
... Dear Arne Smits and Wolfgang Huber, First, Thank you for your amazing package it really helps me a lot to easily perform the kind of analysis that I was looking for. But there is one thing that I would like to know, is there a way to perform the missing value imputation in a group wise manner, jus ...
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Remote rejected after resetting to previous commit
... Hi all, I submitted a merge commit, where I later realised that the only thing it includes are duplicate commits. This is the current log: commit 80fccdc8bfcc8a4b6b8c17a8b2f46e19031b5cd8 (HEAD, bioc_upstream/master) Merge: c6f7deb 0cc3075 Author: Alexander Gosdschan <alexander.gosdschan@mdc-ber ...
git github written 8 months ago by alex.gos9010 • updated 8 months ago by nitesh.turaga130
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as.data.table method for GRanges modifies the original object by reference
... When using the as.data.table() function from the data.table package to create a data.table out of a GRanges object, the default method is called (https://github.com/Rdatatable/data.table/blob/master/R/as.data.table.R#L8-L10). This leads to the problem that the new data.table modifies the original d ...
genomicranges data.table written 12 months ago by alex.gos9010

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