User: zhaoxw198866

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Posts by zhaoxw198866

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Cummerbund differential expression data analysis package issue
... Whereby I'm trying to output cuffdiff data into cummeRbund, but it appears to be having issues with connection to a database (below). Does anyone have any suggestions as to how I can fix this? Thanks!   cuff=readCufflinks() Creating database F:/1Evs1L/cuffData.db Reading Run Info File F:/1Evs1L/run ...
cummerbund rna-seq written 3 months ago by zhaoxw1988660 • updated 3 months ago by shepherl ♦♦ 510
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Answer: A: Question: readCufflinks problem with extdata for cummeRbund
... Some guys suggested that I should install RSQLite1.1-2, not 2.0​. But when I installed 2.0 vesion, "Error: package or namespace load failed for ‘Gviz’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])", there are RSQLite need >= 2.0 to load Gviz​.     ...
written 3 months ago by zhaoxw1988660
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Question: readCufflinks problem with extdata for cummeRbund
... I recently started working with RNA-Seq and I reached the step where I analyze my data using cummeRbund. I thought of doing some tutorials first to get to know the package, but I'm having problems with that. I followed the instructions in the sample workflow:   source("https://bioconductor.org/bi ...
software error written 3 months ago by zhaoxw1988660 • updated 9 weeks ago by shastry.a0

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