User: reubenmcgregor88
reubenmcgregor88 • 0
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Posts by reubenmcgregor88
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... Hi,
I was plotting 3D PCA's from Desq2 output using simple:
> pcaplot3d(ddsMF, intgroup = "donor")
I then updated some packages:
> install.packages(c("httr", "Matrix", "plotrix", "shape", "shiny", "threejs", "tidyr"))
And now the pcaplot3D function returns this error:
Error in scatterpl ...
written 19 hours ago by
reubenmcgregor88 • 0
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... Thank you Gavin,
I see your points, both of them. I am using the most recent DESeq2 version, sorry I should have specified version etc.
However, as far as I can gather, there is something wrong with my design, please bare with me.
when I run the original:
> dds <- DESeqDataSetFromMatrix(c ...
written 4 days ago by
reubenmcgregor88 • 0
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Hi all,
I have what may seem like as really simple questions, but being new to using R in general and very new to DEseq2 I just can not figure it out reading the manual (which is great and very informative for a biologist, thanks!)
I have a simple design of 3 donors (A, B and C) and 3 conditio ...
written 6 days ago by
reubenmcgregor88 • 0
• updated 6 days ago by
Gavin Kelly • 250
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