User: Benilton Carvalho

Reputation:
4,220
Status:
Trusted
Location:
Brazil/Campinas/UNICAMP
Twitter:
benilton
Scholar ID:
Google Scholar Page
Last seen:
4 months, 2 weeks ago
Joined:
7 years, 9 months ago
Email:
b*******@unicamp.br

Posts by Benilton Carvalho

<prev • 434 results • page 1 of 44 • next >
0
votes
1
answers
397
views
1
answers
Comment: C: setdiff for GenomicRanges
... Many thanks! Understanding that ranges are seen as sets of integers was key! ...
written 14 months ago by Benilton Carvalho4.2k
3
votes
1
answer
397
views
1
answer
setdiff for GenomicRanges
... Hi everyone, I'm wondering if the following is the expected behaviour for setdiff: gr1 <- GRanges('a', IRanges(c(1, 3), c(2, 9))) gr2 <- GRanges('a', IRanges(20, 30)) gr3 <- GRanges('a', IRanges(c(1, 4), c(2, 9))) diff1 <- setdiff(gr1, gr2) diff2 <- setdiff(gr3, gr2) My expectatio ...
genomicranges written 14 months ago by Benilton Carvalho4.2k • updated 14 months ago by Michael Lawrence9.8k
2
votes
1
answer
299
views
1
answer
setdiff between GenomicRanges objects keeping metadata
... Hi guys, Given I have two objects as below: mydata <- GRanges('chr9', IRanges(37902608, 69267842), info1=1, info2=2) centromere <- GRanges('chr9', IRanges(46200000, 60800000)) setdiff(mydata, centromere)   How do I get the result of setdiff, but keeping the info1 and info2 fields from myd ...
genomicranges written 14 months ago by Benilton Carvalho4.2k • updated 14 months ago by Michael Lawrence9.8k
0
votes
0
answers
361
views
0
answers
Job: Two Post-doctoral Positions at University of Campinas
... We are looking for two motivated individuals to join the multi-disciplinary BRAINN (Brazilian Institute of Neuroscience and Neurotechnology) team at the University of Campinas (UNICAMP/Brazil) as Post-doctoral Researchers in Biostatistics and Computational Biology. These are (initially) 2 year FAPES ...
job computational biology stats post-doc written 15 months ago by Benilton Carvalho4.2k
0
votes
1
answers
471
views
1
answers
Answer: A: installing error for oligo package
... The error says you're missing a Fortran compiler on your system.  ...
written 20 months ago by Benilton Carvalho4.2k • updated 20 months ago by Dan Tenenbaum ♦♦ 8.2k
0
votes
1
answers
447
views
1
answers
Comment: C: Limma/oligo always crashing
... Can you please try running your code without R Studio and sending (copy and paste the full session, including the error) to us?  Thank you very much, benilton  -------- Original message -------- From: "hakimelakhrass [bioc]" <noreply@bioconductor.org> Date: 04/02/2016 18:34 (GMT-03:00) ...
written 21 months ago by Benilton Carvalho4.2k
0
votes
1
answers
1.7k
views
1
answers
Comment: C: Oligo package RMA() function giving error
... Can you please start a brand new R session and not load the affy package? Just start a new session and go with: library(oligo) celFiles = list.celfiles() affyRaw <- read.celfiles(celFiles) eset <- rma(affyRaw) This issue can be issued by having the affy package loaded along with oligo. ...
written 2.3 years ago by Benilton Carvalho4.2k
0
votes
1
answers
1.7k
views
1
answers
Answer: A: Oligo package RMA() function giving error
... Hi Jo, can you please let me know the results of the command sessionInfo() right after you get the error, just so I can investigate the origin of the problem and propose a fix? Many thanks, benilton ...
written 2.3 years ago by Benilton Carvalho4.2k
0
votes
2
answers
409
views
2
answers
Answer: A: Error with annotation package with pdInfoBuilder for NimbleGen arrays
... You need to perform filtering manually in this case. The objects expected by nsFilter() are those created for the affy package and, for this reason, won't play nice with oligo objects at this point. b ...
written 2.4 years ago by Benilton Carvalho4.2k
0
votes
4
answers
883
views
4
answers
Answer: A: pd.huex.1.0.st.v2 package doubt
... Hi Elena, When the current Bioconductor version was released, the annotation version available from Affymetrix was NA33.1... This is the version used to create the package you're using. Affymetrix released the NA35 annotations after our Bioc release. You can download the (source) package from the ...
written 2.5 years ago by Benilton Carvalho4.2k

Latest awards to Benilton Carvalho

Centurion 3.2 years ago, created 100 posts.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.2.0
Traffic: 138 users visited in the last hour