User: Aleksandra
Aleksandra • 0
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Posts by Aleksandra
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... Thank you very much for your explanation. I thought that locateVariants function would describe a variant regardless of the genomic region type. Now I know that it does not cover exons in non-coding genes. It would be helpful if the ExonVariants() function also exists :)
Aleksandra
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written 14 months ago by
Aleksandra • 0
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... Did the Author describe which method of data preprocessing was used? If he only wrote that "The raw data were firstly preprocessed using the Affy package in R language [ 12 , 13 ]", it is very imprecise. Did he use rma or mas? Meybe he just used a different preprocessing method than you.
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written 14 months ago by
Aleksandra • 0
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... Hi,
I have a list of loci that I would like to annotate with locateVariants function. However, the function does not annotate some variants I am interested in. Below I put an example for the locus chr5:1599742 (genome hg19). I know from UCSC that there is a gene "LOC728613" and a few transcripts. B ...
written 14 months ago by
Aleksandra • 0
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