## User: CataVallejos

CataVallejos10
Reputation:
10
Status:
New User
Location:
MRC Human Genetics Unit & The Alan Turing Institute
Website:
http://vallejosgroup.g...
@CataVallejosM
Scholar ID:
Last seen:
2 months, 1 week ago
Joined:
2 years, 3 months ago
Email:
c****************@igmm.ed.ac.uk

#### Posts by CataVallejos

<prev • 3 results • page 1 of 1 • next >
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... Indeed, I will expect that DESeq2 and BASiCS report similar results when assessing changes in mean expression between the groups. Said this, the main advantage of using BASiCS is the differential variability testing (through over-dispersion or, more recently, residual over-dispersion https://www.bio ...
written 22 months ago by CataVallejos10
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413
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... Yes, you should run BASiCS_MCMC separately for each group of samples and then use those as the input of BASiCS_TestDE. Let me know if you have any issues while running the analysis.     ...
written 22 months ago by CataVallejos10
1
375
views
1
... Hello, Indeed, the current release of BASiCS (BioC 3.6) cannot be used without spike-ins. Recently, we extended the method to the no-spikes case and that is available in BioC devel (see also https://www.biorxiv.org/content/early/2017/12/21/237214).    However, I am afraid that BASiCS is *not* sui ...
written 22 months ago by CataVallejos10

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