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Posts by maithex
... Thanks a lot for your reply, Michael. I have renamed my variables.I ran: ddsLRT <- DESeqDataSet(se, design = ~ horse + timepoint) ddsLRT <- estimateSizeFactors(ddsLRT) ddsLRT <- estimateDispersions(ddsLRT) ddsLRT <- nbinomLRT(ddsLRT, reduced = ~ horse) resLRT <- results(ddsLRT) table ...
... Hello, I am doing RNA-seq analysis of differential gene expression from mare's endometrial biopsies. I do not have any treatments though, and this is the reason I am having a hard time trying to figure out the design I should use as all examples I found so far had treatments + time points. I have ...
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