User: dorothy.jrobbert

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Posts by dorothy.jrobbert

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Evaluating Hub genes in WGCNA and role of using Signed network
... I have a dataset in which I study the effects of a demethylating agent. I have 16 control untreated samples and 16 treated samples (with the demethylating agent) of moue haematopoetic stem cells. RNA-Seq data was obtained for all 32 samples. I used DESEq2 package to calculate DE. I intended to obtai ...
rnaseq wgcna written 8 weeks ago by dorothy.jrobbert10
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Solving error for error of factors
... Hello, I have a very large dataset which I downloaded from TCGA for pancreatic cancer. It has one normal sample but 184 patient samples. So, It has 186 columns (no technical replicates) and 20500 rows for all the genes. I am trying to get log2fold change data from this using deseq2. To begin my ana ...
cancer deseq2 R written 13 months ago by dorothy.jrobbert10 • updated 13 months ago by Michael Love19k
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Comment: C: Matching columns to sample names
... Hello, I have a very large dataset which I downloaded from TCGA for pancreatic cancer. It has one normal sample but 184 patient samples. So, It has 186 columns (no technical replicates) and 20500 rows for all the genes. I am trying to get log2fold change data from this using deseq2. To begin my ana ...
written 13 months ago by dorothy.jrobbert10

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