User: herrmannmaria94

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Posts by herrmannmaria94

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Comment: C: DESeq2 ComputeSumFactors extract normalized counts
... I am so sorry! I was so wiped out yesterday by a cold that I couldn't think of the obvious solution. Thank you for your answer! :) ...
written 2.1 years ago by herrmannmaria940
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Answer: A: DESeq2 ComputeSumFactors extract normalized counts
... I would like to only extract normalized counts, not log-normalized counts. Afterwards I want to use my TPM and logTPM calculation. ...
written 2.1 years ago by herrmannmaria940
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DESeq2 ComputeSumFactors extract normalized counts
... I have a single cell RNA-dataset and I used the deconvolution method for normalization. Now I want to extract the matrix with all normalized counts but it is not working. I tried the following:  sce <- computeSumFactors(sce, sizes=c(20, 40, 60, 400)) #Computing separate size factors for spike-i ...
normalization deseq2 counts written 2.1 years ago by herrmannmaria940 • updated 2.1 years ago by Michael Love25k

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