User: Chen

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Chen0
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Posts by Chen

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Comment: C: DEXSeq error with estimateExonFoldChanges
... I feel it's hitting the memory limit. When I specify 350G memory, one experiment with 32 samples successfully finished. But other experiments with more samples failed as usual. Also, the number of exons matters as well. In one trial, I defined over 100 exons (not real exons) and the program crashed ...
written 2.0 years ago by Chen0
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Comment: C: DEXSeq error with estimateExonFoldChanges
... Please see the update in the main question description, thx. ...
written 2.1 years ago by Chen0
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Comment: C: DEXSeq error with estimateExonFoldChanges
... I tried using serial instead of parallel, and it still produces the same error... ...
written 2.1 years ago by Chen0
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DEXSeq error with estimateExonFoldChanges
... Hi there, I'm try to use DEXSeq to analysis differential exon usage and it worked fine with small sample sizes. But when my sample size goes over 30, the "estimateExonFoldChanges" function start to output the following error: "Error in .local(x, ...):  cannot create 126 workers; 125 connections av ...
dexseq software error R written 2.1 years ago by Chen0

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