User: stu111538

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stu1115380
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Germany, Kiel, UKSH Kiel
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Posts by stu111538

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Comment: C: BSgenomeForge error in .TwoBits_export
... ok, thank you very much! Then, I will wait until Monday and try to install the fixed BSgenome. ...
written 6 months ago by stu1115380
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Answer: A: BSgenomeForge error in .TwoBits_export
... In the package destdir 'BSgenome.Hsapiens.NCBI.GRCh38.p11' there is a file called R/zzz.R. This is its content, maybe it helps ### ### .pkgname <- "BSgenome.Hsapiens.NCBI.GRCh38.p11" .seqnames <- NULL .circ_seqs <- "NC_012920.1" .mseqnames <- NULL .onLoad <- function(libname, pk ...
written 6 months ago by stu1115380
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Answer: A: BSgenomeForge error in .TwoBits_export
... Hi Herve, sorry, for the confusion! I just added the RRBS-spike sequences for internal control of conversion rate. I also used those sequences for the alignment, that is why I thought it might be better to inlcude them in the GRCh38.p11 reference for BSgenome (I wanted to prevent error messages bec ...
written 6 months ago by stu1115380
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BSgenomeForge error in .TwoBits_export
... Hello, Using "forgeBSgenomeDataPkg" I get an error I cannot solve. The problem seems to be to create the twobit file. I have write permission in the destdir and enough disc space on my drive. The sequence data are located in a directory mounted from a linux-server, but I think this is not the probl ...
bsgenome forge twobits_export written 7 months ago by stu1115380 • updated 6 months ago by Hervé Pagès ♦♦ 13k

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