User: fawazfebin

gravatar for fawazfebin
fawazfebin0
Reputation:
0
Status:
New User
Location:
Last seen:
2 weeks, 3 days ago
Joined:
1 month, 3 weeks ago
Email:
f*********@gmail.com

Posts by fawazfebin

<prev • 16 results • page 1 of 2 • next >
0
votes
1
answers
94
views
1
answers
Comment: C: Design of 'group' object in DGElist function
... Thanks a lot. I was a bit confused on multiple factors. The third chapter helped. ...
written 18 days ago by fawazfebin0
0
votes
0
answers
125
views
0
answers
Comment: C: Adding gene names which are differentially expressed in the plot
... I would like to get a scatterplot with gene names.Thanks in advance ...
written 18 days ago by fawazfebin0
0
votes
0
answers
125
views
0
answers
Adding gene names which are differentially expressed in the plot
... Hi Can anyone please guide me on plotting a graph showing the gene names of top differentially expressed genes in edgeR ?     ...
edger plot differential gene expression written 19 days ago by fawazfebin0
0
votes
1
answers
153
views
1
answers
Answer: A: No genes found in universe : goana error
... I was able to solve it by giving the column name of ENTREZID  for "geneid " in goana function.  ...
written 19 days ago by fawazfebin0
0
votes
2
answers
165
views
2
answers
Answer: A: RNA Seq analysis vs. Single cell RNA seq analysis
... Great thanks ! ...
written 19 days ago by fawazfebin0
0
votes
1
answer
94
views
1
answer
Design of 'group' object in DGElist function
... Hi I have two replicates for two conditions ( resistant and sensitive ) at two time intervals for conducting a Differential Expression analysis using edgeR. How do I assign the condition for ' group ' in DGElist function? My data would look like R1,R2 vs. S1,S2 at one time interval and R3,R4 vs. S3 ...
rnaseq dgelist group egder written 19 days ago by fawazfebin0 • updated 18 days ago by Aaron Lun17k
0
votes
1
answer
153
views
1
answer
No genes found in universe : goana error
... Hi I was doing a gene ontology analysis on a set of differentially expressed genes. The goana function returns an error saying ," No genes found in universe". Here is the code I ran for differential expression analysis ('countdata' represents the dataframe containing counts of each gene in each of ...
edger gene ontology goana written 6 weeks ago by fawazfebin0
0
votes
2
answers
165
views
2
answers
Comment: C: RNA Seq analysis vs. Single cell RNA seq analysis
... Ok. Thanks for the guidance. ...
written 6 weeks ago by fawazfebin0
4
votes
2
answers
165
views
2
answers
RNA Seq analysis vs. Single cell RNA seq analysis
... Hi I would like to know how similar is scRNA Seq analysis to normal RNA seq analysis. What are the additional steps to be followed in scRNA Seq analysis, especially during differential expression step? ...
rnaseq edger scrnaseq written 6 weeks ago by fawazfebin0
0
votes
1
answers
136
views
1
answers
Comment: A: Differential expression of individual genes using edgeR
... Sir , How do we get to know which of the genes are differentially expressed from the smear plot of DE in edgeR ? For example , I wanted to know if the gene ORAI1 has been up regulated or down regulated in the sample with respect to control : How will I interpret it from the smear plot of edgeR? I w ...
written 7 weeks ago by fawazfebin0

Latest awards to fawazfebin

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.2.0
Traffic: 213 users visited in the last hour