User: kendralec

gravatar for kendralec
kendralec10
Reputation:
10
Status:
New User
Location:
Stanford University
Last seen:
3 months, 3 weeks ago
Joined:
1 year, 2 months ago
Email:
k*****************@gmail.com

Posts by kendralec

<prev • 4 results • page 1 of 1 • next >
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Comment: C: lfcshrink in DESeq2 with grouping variable
... Hi Michael, Thanks for your quick response! This works perfectly. I was having trouble wrapping my brain around the examples given in the "Group-specific condition effects" section of the vignette, but it makes sense now. Much appreciated!   ...
written 3 months ago by kendralec10
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lfcshrink in DESeq2 with grouping variable
... Hello, I am looking for advice about how to correctly use the "coef" argument to lfcshrink when I am using DESeq2 with a grouping variable. I am analyzing an RNAseq dataset with multiple factors and variables using DESeq2: SurgeryGroup (injury versus sham) TimePoint (1 versus 2) Sex (M versus ...
deseq2 lfcshrink written 3 months ago by kendralec10 • updated 3 months ago by Michael Love20k
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Comment: C: Differential expression analysis desgin
... Thank you for your helpful and quick response! The limma user guide is really clarifying my understanding of the two approaches -- it wasn't clear to me from the DESeq2 guide that the two approaches are equivalent, but I agree that the one factor approach is much easier to interpret!  I expect the ...
written 14 months ago by kendralec10
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Differential expression analysis desgin
... Hi everyone,   I am finalizing the design of an RNASeq experiment and am having doubts about how I should plan to approach differential expression analysis. My design includes three factors of interest: Surgery group (2 levels-sham and surgery), time point (2 levels), and sex (2 levels). I have so ...
limma edger deseq2 differential expression interactions written 14 months ago by kendralec10 • updated 14 months ago by Gordon Smyth35k

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