User: salvocomplicazioni1

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Posts by salvocomplicazioni1

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Problems with Edge R normalization in same sample but using different ref genomes.
... Hi Starting from Rna-seq data raw counts, I used TCGAanalyze_Normalization function based on edger, so i obtained normalized count. If i perform same analysis on two data type (GRCh37 and GRCh38) i obtain completely different normalized counts. Results are these: GRCh38   Sample1 ...
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TCGA-biolink: GRCH38 RNA-seq, normalized counts matrix, Converting ensemble gene name into common gene name
... I'm trying to analyze TCGA RNA-seq data, so i used TCGAbiolinks, I arrived at normalization data step and i obtained normalized counts matrix, How can I change Ensemble gene name into common gene name? ...
annotation grch38 tcgabiolinks written 12 months ago by salvocomplicazioni10 • updated 11 months ago by tiagochst100

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