User: mgdrnl

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mgdrnl0
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Posts by mgdrnl

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ASpli package function plotGenomicRegions fails in windows
... Dear all I am using the following function in ASpli package: mm10 <- TxDb.Mmusculus.UCSC.mm10.knownGene features <- binGenome(mm10) targetssmall <- cbind(c( "257101.bam","258113.bam","259125.bam","260137.bam"),c("la", "la", "pi", "pi")) colnames(targetssmall)[1] <-"ba ...
aspli plotgenomicregions written 4 weeks ago by mgdrnl0
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SGFeatureCounts function in SGSeq package failed to generate splice graphs
... Hello I think this question is for the package developers, but maybe somebody had the same problem. I am traying to analyze 59 bam files in a computer with 110GB of available memory usage, all bam files occupy 149GB. I can't obtain the splice graph and I don't get any error message.. I monitorized ...
sgseq written 22 months ago by mgdrnl0 • updated 22 months ago by Leonard Goldstein80
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Error: subscript out of bounds when using ucscGenomes() and supportedGenomes() functions in goseq and rtracklayer packages respctively
... Hello I got this error when using supportedGenomes() in goseq package: > library(goseq) Loading required package: BiasedUrn Loading required package: geneLenDataBase > head(supportedGenomes()) Error in getNodeSet(doc, "//table[@class='descTbl']")[[1L]] : subscript out bounds I got the sam ...
rtracklayer goseq written 22 months ago by mgdrnl0

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