User: corend

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corend0
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Posts by corend

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Comment: C: DESeq2 biais when genes are missing from the annotation?
... 90% condition B 93% condition A   ...
written 9 days ago by corend0
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Comment: C: DESeq2 biais when genes are missing from the annotation?
... Yes indeed, I map 65% of my reads in condition B and 55% in condition A. ...
written 9 days ago by corend0
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DESeq2 biais when genes are missing from the annotation?
... As this concerns bioinformatics in general, I also posted here. I am working on RNAseq data, I made my count table using kallisto and then tximport to work with DESeq2. My genes are a set of cDNAs, (supposed to be corresponding to all the genes of my species), but the annotation is quite bad, whe ...
rnaseq deseq2 written 10 days ago by corend0 • updated 9 days ago by Michael Love15k
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cummeRbund grouping by TSS / CDS / Isoforms
... I posted here a moment ago as it is a general bioinformatics question, but I will ask again here as it is about a bioconductor package cummeRbund. I am working on RNA-seq data with cufflinks. I now use cummeRbund to analyze my results. cummeRbund performs expression quantification between genes / ...
cufflinks cummrbund written 22 days ago by corend0

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