User: Paul Brennan

gravatar for Paul Brennan
Paul Brennan10
Reputation:
10
Status:
New User
Location:
Cardiff, UK
Website:
http://rforbiochemists...
Twitter:
brennanpcardiff
Last seen:
10 months, 1 week ago
Joined:
2 years, 1 month ago
Email:
b****************@gmail.com

Reader in School of Medicine, Cardiff University, Cardiff, UK. 

Interest: data visualisation, R, biochemistry, open data, equality & diversity, education. 

Creator of R for Biochemists Blog

Creator of drawProteins, an R package for visualizing proteins. 

Posts by Paul Brennan

<prev • 6 results • page 1 of 1 • next >
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Comment: C: drawProteins from Uniprot entry (missing chain information)
... Hi James, Nice job. To add to your answer, we can use the amino acid sequence to calculate the protein length. Here is some code that will do that. Best wishes, Paul ``` # Load the package required to read JSON files. library("rjson") url<-"https://www.ebi.ac.uk/proteins/api/featu ...
written 10 months ago by Paul Brennan10
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Answer: A: Add aa sites altered by SNPs
... Hello Tiphaine, Sorry for the slow response to this question. Yes you can easily add new features with your choice of colors and they can be added below or above the protein. There is some code here that shows how to plot variants: https://rforbiochemists.blogspot.com/2018/02/my- ...
written 10 months ago by Paul Brennan10
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Answer: A: Advice on finding: "1 lines (0%) are > 80 characters long" - my last BiocCheck N
... Another check of my man files revealed too long a title generated by roxygen2 documentation.  It was in a data object and the title went over two lines.  ...
written 2.1 years ago by Paul Brennan10
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Advice on finding: "1 lines (0%) are > 80 characters long" - my last BiocCheck NOTE
... Hi,       I'm BiocChecking my package and through various ways, I'm down to a single NOTE that is created by a single line of code. Here is the note.  * Checking formatting of DESCRIPTION, NAMESPACE, man pages, R source, and vignette source... * NOTE: Consider shorter lines; 1 lines (0%) ar ...
bioccheck package development written 2.1 years ago by Paul Brennan10
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Comment: C: How to solve "WARNING: Add non-empty \value" with roxygen tags
... Thanks for the prompt, helpful and correct response. One less warning.  In my case it is a repeat of the @format tag... You left out the @format tag is that OK? Thanks again,  Paul ...
written 2.1 years ago by Paul Brennan10
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How to solve "WARNING: Add non-empty \value" with roxygen tags
... Hello,       I am developing a package to automate the drawing of protein schematics. I don't think a similar package exists in R or Bioconductor and I hope I haven't missed someone else's package. The github repo is here: https://github.com/brennanpincardiff/drawProteins. I'm working to raise it t ...
bioc-devel warning bioccheck roxygen2 package development written 2.1 years ago by Paul Brennan10 • updated 2.1 years ago by Lluís Revilla Sancho530

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