User: Paul Brennan

Paul Brennan10
Reputation:
10
Status:
New User
Location:
Cardiff, UK
Website:
http://rforbiochemists...
brennanpcardiff
Last seen:
8 months, 2 weeks ago
Joined:
1 year, 11 months ago
Email:
b****************@gmail.com

Reader in School of Medicine, Cardiff University, Cardiff, UK.

Interest: data visualisation, R, biochemistry, open data, equality & diversity, education.

Creator of R for Biochemists Blog

Posts by Paul Brennan

<prev • 6 results • page 1 of 1 • next >
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... Hi James, Nice job. To add to your answer, we can use the amino acid sequence to calculate the protein length. Here is some code that will do that. Best wishes, Paul ` # Load the package required to read JSON files. library("rjson") url<-"https://www.ebi.ac.uk/proteins/api/featu ...
written 8 months ago by Paul Brennan10
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... Hello Tiphaine, Sorry for the slow response to this question. Yes you can easily add new features with your choice of colors and they can be added below or above the protein. There is some code here that shows how to plot variants: https://rforbiochemists.blogspot.com/2018/02/my- ...
written 8 months ago by Paul Brennan10
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... Another check of my man files revealed too long a title generated by roxygen2 documentation.  It was in a data object and the title went over two lines.  ...
written 23 months ago by Paul Brennan10
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... Hi,       I'm BiocChecking my package and through various ways, I'm down to a single NOTE that is created by a single line of code. Here is the note.  * Checking formatting of DESCRIPTION, NAMESPACE, man pages, R source, and vignette source... * NOTE: Consider shorter lines; 1 lines (0%) ar ...
written 23 months ago by Paul Brennan10
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... Thanks for the prompt, helpful and correct response. One less warning.  In my case it is a repeat of the @format tag... You left out the @format tag is that OK? Thanks again,  Paul ...
written 23 months ago by Paul Brennan10
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... Hello,       I am developing a package to automate the drawing of protein schematics. I don't think a similar package exists in R or Bioconductor and I hope I haven't missed someone else's package. The github repo is here: https://github.com/brennanpincardiff/drawProteins. I'm working to raise it t ...
written 23 months ago by Paul Brennan10 • updated 23 months ago by Lluís Revilla Sancho510

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