User: clarisbaby

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clarisbaby0
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Posts by clarisbaby

<prev • 8 results • page 1 of 1 • next >
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Comment: C: error: NA counts not permitted
... anyNA(countDF) says false... countDFeByg has all the values as zero. When i started looking around i found that it may be due to BAM and GFF files that use different chromosome names. how can i solve that.. my gff file looks as below ##gff-version 3 ##sequence-region   I 1 15072434 ##sequence-re ...
written 19 days ago by clarisbaby0
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error: NA counts not permitted
... hey everyone, I am trying to run the following code for C. elegans paired end data using the following code: library("biomartr", lib.loc="~/R/x86_64-pc-linux-gnu-library/3.4") library(BSgenome.Celegans.UCSC.ce11) export(Celegans, "dataset/ce11.fasta", compress=FALSE) getGFF(db = "ensembl", organi ...
edger systempiper rna-seq written 20 days ago by clarisbaby0 • updated 20 days ago by Aaron Lun19k
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Comment: C: Error in useMart while using a dataset in biomaRt
... Thanku so much @Mike Smith. The above stated command worked just fine and some of my packages do seem to be out-of-date, I will surely try and update them. Thanks for the suggestion too. ...
written 3 months ago by clarisbaby0
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Error in useMart while using a dataset in biomaRt
... Hey everyone, I am trying to use C. elegans dataset available from biomaRt for annotation purpose. The commands I use runs at a given point of time and shows no error while the same command give error when run again. I have tried to run different variations for the same command, but each one has th ...
annotation celegans biomart bioconductor written 3 months ago by clarisbaby0 • updated 3 months ago by Mike Smith2.6k
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Answer: A: Error in file.choose() : file choice cancelled
... Thank You so much @Martin Morgan.  if (interactive()) { bam = file.choose() } else { bam = system.file(...) } this command worked perfectly and solved the error. I am really sorry for being so vauge in my question. I will surely take your suggestion while posting any question next time.  ...
written 5 months ago by clarisbaby0
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Error in file.choose() : file choice cancelled
... Hey everyone!! I am trying to build a package for RNA-seq analysis combining different existing packages in bioconductor and am facing problem while Writing Vignettes for the package. On including R code for function that contains file.choose() option in the Vignettes following error is obtained wh ...
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Answer: A: warning: example doesn't exist; while trying to build a package
... thanku so much shepherl and Lluis.... this worked!!! Just changing @example to @examples removed the warning  ...
written 5 months ago by clarisbaby0
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warning: example doesn't exist; while trying to build a package
... Hey everyone!! I am trying to build a package for RNA-seq analysis combining different existing packages in bioconductor and am facing problem while trying to build and reload the package. There is no error but a warning saying testing.R:14: @example /home/disc/testing/fqcR() doesn't exist I am ...

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