User: A

gravatar for A
A • 40
Reputation:
40
Status:
New User
Location:
Last seen:
5 days, 20 hours ago
Joined:
1 year, 9 months ago
Email:
a***********@gmail.com

Posts by A

<prev • 69 results • page 1 of 7 • next >
0
votes
1
answer
127
views
1
answers
Comment: C: Creating a similarity matrix for genes and not values
... Thanks! I will do that next time!.. With regards to your proposed solution, the frequency of the individual genes themselves isn't helpful in understanding groups of genes that are associated with reference genes throughout. Its about how many other genes it occurs with.So while its useful to know ...
written 6 months ago by A • 40
0
votes
1
answer
127
views
1
answer
Creating a similarity matrix for genes and not values
... Hi all, I was wondering if anybody might have some advice on identifying groups of genes that occur in groups multiple times in a list. I am carrying out time series data analysis and i carried out a co-expression analysis which is really nice, giving us nice ideas of which genes might be changin ...
similarity matrix common genes recurring groups written 6 months ago by A • 40 • updated 6 months ago by James W. MacDonald ♦ 50k
0
votes
1
answer
187
views
1
answers
Comment: C: Results table completely wrong for specified contrast of
... Thank you so so much for confirming and for clarifying this. No further questions! I can now analyse the data! Thank yo for your time :) ...
written 6 months ago by A • 40
0
votes
1
answer
187
views
1
answers
Comment: C: Results table completely wrong for specified contrast of
... Thank you so much for that clarification and the link, that is perfectly clear! With regards to your second question.. This is a developmental time course experiment across different genotypes. However as well simpyl doing a time series analyses, we would also like to carry out pairwise comparisons ...
written 6 months ago by A • 40 • updated 6 months ago by Martin Morgan ♦♦ 23k
0
votes
1
answer
187
views
1
answers
Comment: C: Results table completely wrong for specified contrast of
... Thank you for clarifying! So just so I'm clear .. is this 1.2 fold increase in the first contrast though? So 1.2 fold increased in the normal sample vs knockout? Secondly, when specifying a contrast if the same age group, would this not mitigate the effects of age specified in the contrast as thes ...
written 6 months ago by A • 40
0
votes
1
answer
187
views
1
answer
Results table completely wrong for specified contrast of
... Hi all, I was wondering if anybody has experienced this issue or if someone can chime in on a very frustrating problem I am having. I think I have not specified my groups correctly given the count data and just the fact that with normalized counts I am getting completely different log fold changes ...
deseq2 counts logfoldchange written 6 months ago by A • 40 • updated 6 months ago by Michael Love ♦ 24k
0
votes
1
answer
292
views
1
answers
Comment: C: RSubread in cygwin
... aaaa sorry!! Never posted an answer on this forum (as mainly ever asked questions ha!) Is there a way to change this? Many thanks! ...
written 7 months ago by A • 40
3
votes
1
answer
292
views
1
answers
Answer: C: RSubread in cygwin
... If you download R from cygwin, you can then download subread through bioconductor on the R package running on cygwin... once R is installed, type R, enter and you'll have R up and running. install rsubread through bioconductor as you would normally I also found the linux shell downloadable from the ...
written 7 months ago by A • 40
2
votes
0
answers
285
views
0
answers
Data preparation and Machine learning on time course RNAseq data
... Hi all, I was wondering if anybody is familiar with machine learning techniques and RNAseq data. I have time-course RNA seq data from multiple different samples, i.e, organs. What I would like to do is extract patterns that are forming in the data going from time 0 up to the last time point. How ...
rnaseq mlseq machine learning deep learning written 7 months ago by A • 40
0
votes
0
answers
299
views
0
answers
Comment: C: mapping FASTQ files to single gene (fluorescent reporter)
... UPDATE Fixed! Top line of the FASTA file was ZsGreen1       (696 bp),  I thought 696bp was part of the title, but changing the first line to ZsGreen1 alone solved the problem!!   ...
written 7 months ago by A • 40

Latest awards to A

Teacher 7 months ago, created an answer with at least 3 up-votes. For C: RSubread in cygwin
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 243 users visited in the last hour