User: karl.nordstroem

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Posts by karl.nordstroem

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cannot reproduce biomaRt vignette
... Hi, I'm having problems following the biomaRt vignette. I think it comes down to instable servers and if this is the wrong place to report this, please point me in the right direction. Here is how far I get: ensembl<-useMart("ensembl") listDatasets(ensembl, verbose=T) ensembl = useDataset("hs ...
biomart written 29 days ago by karl.nordstroem0 • updated 29 days ago by Mike Smith2.7k
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cmetindex missing in gmapr? Not possible to do bisulfite alignments
... I wanted to generate bisulfite alignments with gmapR, but cannot get it to work. I can generate a normal alignment similar to how it is described in the documentation. Running gsnap on the command line, you normally have to run cmetindex in order to prepare a normal genomic index for bisulfite alig ...
gmapr written 7 months ago by karl.nordstroem0 • updated 7 months ago by Michael Lawrence10.0k

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