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Posts by burcu.atasu
... Hi, I need to figure out which approach is more appropriate regarding filtering lowly expressed genes. According to tximport manual, it is recommended to follow following commands for EdgeR analysis: library(edgeR) cts <- txi$counts normMat <- txi$length normMat <- normMat/exp(rowMeans(lo ...
... Hi! I've been performing RNAseq analysis by using svaseq package for batch effect correction. I have identified two slightly correlated known batch effect variables (such as; flowcell, date of data prep.). My question is if I use those two correlated (r=0.81) known batch effect varaibles in my mod ...
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