User: eggrandio

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eggrandio0
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Posts by eggrandio

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Comment: C: DiffBind does not run in parallel
... I tried it with bParallel=FALSE but I am still getting files skipped. Sometimes it's just one, sometimes it's 10 of them. I am running the debug. What should I look for? Does it give an automated report at the end? Alternatively, I could add a line so it stops after finding any library with size 0 ...
written 15 months ago by eggrandio0
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Comment: C: DiffBind does not run in parallel
... Thanks for the quick reply ! I do not know if it's appropiate, but instead of starting a new thread I wanted to ask you a follow-up question. I have a huge dataset (32 files) and when I run the dba.count command, sometimes, it skips some files and doesnt count the reads. I have run it several time ...
written 15 months ago by eggrandio0
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DiffBind does not run in parallel
... Hi, I am trying to run DiffBind using parallel execution but it does not detect multiple cores, although I can through: > parallel::detectCores() [1] 8 When I try to run DiffBind. Here's what I see with a test run: > test = dba(sampleSheet = "TEST.xls") wt_D_1 wt D 1 bayes wt_D_2 wt D ...
diffbind biocparallel parallel written 15 months ago by eggrandio0 • updated 15 months ago by Rory Stark2.8k

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