User: emy_66

gravatar for emy_66
emy_66 • 0
Reputation:
0
Status:
New User
Location:
Last seen:
1 year ago
Joined:
1 year ago
Email:
e*****@hotmail.com

Posts by emy_66

<prev • 3 results • page 1 of 1 • next >
0
votes
1
answers
717
views
1
answers
Comment: C: No annotated genes found in universe error using goana and kegga
... Oh I see ... in the documentation it is a little confusing since I assumed that fly-base IDs mean FlyBase IDs  'The default for kegga with species="Dm" changed from convert=TRUE to convert=FALSE in limma 3.27.8. Users wanting to use Entrez Gene IDs for Drosophila should set convert=TRUE, otherwise ...
written 12 months ago by emy_66 • 0
0
votes
1
answers
717
views
1
answers
Comment: C: No annotated genes found in universe error using goana and kegga
... Thanks for your reply Gordon, Yes, the gene IDs are stored in rowans(lrt) : str(rownames(lrt)) chr [1:1946] "FBgn0000014" "FBgn0000015" "FBgn0000024" "FBgn0000036" ... kegga.de=kegga(lrt,species="Dm") Error in kegga.default(de = DEGenes, universe = universe, ...) :  No annotated genes found in ...
written 12 months ago by emy_66 • 0
0
votes
1
answer
717
views
1
answer
No annotated genes found in universe error using goana and kegga
...   Hi, I'm trying to run enrichment analysis on flybase gene ids using goana and kegga from limma. However I keep getting the same error  fit <- glmFit(x, design) lrt <- glmLRT(fit,coef=2) kegga.de=kegga(lrt,species='Dm') Error in kegga.default(de = DEGenes, universe = universe, ...) :  ...
limma goana gene set enrichment written 12 months ago by emy_66 • 0

Latest awards to emy_66

No awards yet. Soon to come :-)
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.2.0
Traffic: 159 users visited in the last hour