User: gdagstn

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Posts by gdagstn

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Comment: C: DESeq2 batch effect with and without interaction model
... Thanks Michael, sorry for the late reply. It works, although the variance is really hindered by the "rogue" batch. Nevertheless I can now find some very interesting differences. I'm impressed at the flexibility of the linear model implementation. Thanks a lot! ...
written 6 months ago by gdagstn0
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DESeq2 batch effect with and without interaction model
... Hi all, I'm trying to analyze RNA-seq data with DESeq2, and I have some batches in my data that I need to account for. Some of them have biological relevance, and some of them are purely technical.  I have 3 patients, 6 time points per patient, and each time point has been sequenced with 2 differe ...
deseq2 R linear model rna-seq design matrix written 6 months ago by gdagstn0 • updated 6 months ago by Michael Love17k

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