User: amy16

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amy160
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Posts by amy16

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Error in reading ballgown object
... Hi, Can someone please advise me on this error? > pheno_data   ids  treatment    genotype 1 B1C    control   Resistant 2 B2C    control Susceptible 3 B3C    control   Resistant 4 B4C    control Susceptible 5 B1T inoculated   Resistant 6 B2T inoculated Susceptible 7 B3T inoculated   Resistant 8 B ...
R ballgown written 2 days ago by amy160 • updated 5 hours ago by Alyssa Frazee110
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Package installation error
... 'C:\Program' is not recognized as an internal or external command, operable program or batch file. I get the above error message when I want to install GenomeInfoDbData package needed for ballgown. Any help appreciated. Thanks in advance. ...
R written 5 weeks ago by amy160
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Comment: C: Ballgown package installation
... 'C:\Program' is not recognized as an internal or external command, operable program or batch file. Warning in install.packages : running command '"C:/Program Files/R/R-34~1.2/bin/x64/R" CMD INSTALL -l "\\UOFA\USERS$\users2\a123456\R\win-library\3.4" "C:/Program Files/RStudio/R/R/WIN- ...
written 6 weeks ago by amy160
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Ballgown package installation
... Hi, When I try to load ballgown package, I get the following error. > library("ballgown", lib.loc="\\\\UOFA/USERS$/users2/a123456/R/win-library/3.4") Error: package or namespace load failed for ‘ballgown’ in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]): there is no package ...
software error written 6 weeks ago by amy160 • updated 6 weeks ago by James W. MacDonald45k
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Comment: C: Trouble installing DESeq / GenomeInfoDb
... Hi, I have a similar error when trying to install Ballgown package from Bioconductor. Following is the error message: > install.packages("C:/Users/a1207602/RStudio-1.1.383/R/downloaded_packages/GenomeInfoDbData_0.99.1.tar.gz", repos = NULL, type = "source") Installing package into ‘\\UOFA/USER ...
written 6 weeks ago by amy160
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RNA-seq for DGE
... I have got RNA-seq reads from Illumina which I've trimmed adapters using trimmomatic and then aligned it with reference genome using hisat2. Now I've run through string tie for transcript identification and quantification. I would like to use ballgown for differential gene expression determination. ...
illumina ballgown stringtie hisat2 written 8 weeks ago by amy160 • updated 8 weeks ago by k.vitting.seerup20

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