User: robles.daniela

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Posts by robles.daniela

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Answer: A: Determining gene expression levels with DESeq2 in a design with no condition
... Hello Simon, Thanks for your answer. Well, I am new to RNA-Seq data expression analysis (you might have figured that already!) and initially I thought I could download the FPKM-UQ values right off from the TCGA project and use them directly with no further processing, as after reading papers and tu ...
written 23 days ago by robles.daniela0
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Determining gene expression levels with DESeq2 in a design with no condition
... Hello all, I am analysing RNA-Seq data generated by the TCGA-SKCM project. After asking about what the best metric to use from those released by the TCGA project (HTSeq-counts, FPKM, or FPKM-UQ) I was advised to use HTSeq-Counts (here), and to further process them with DESeq2. My objective is to i ...
deseq2 tcga written 23 days ago by robles.daniela0

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