User: mnandita

gravatar for mnandita
mnandita0
Reputation:
0
Status:
New User
Location:
Last seen:
1 month, 2 weeks ago
Joined:
8 months, 4 weeks ago
Email:
m*******@gmail.com

Posts by mnandita

<prev • 2 results • page 1 of 1 • next >
0
votes
2
answers
563
views
2
answers
Comment: C: DESeq2 vs Ballgown results
... Hi Alyssa, Even with transcript-level DE analysis using Ballgown, we haven't had much success- many of the transcripts identified as D.E. from ballgown, did not show a clear D.E. when visualizing the raw bam files in IGV. I've described an example in issue #2 here https://support.bioconductor.org/ ...
written 12 weeks ago by mnandita0
0
votes
0
answers
331
views
0
answers
RNA-seq with hisat2+stringtie+ballgown
... Our lab has tried to adopt the Pertea et al protocol (https://www.nature.com/articles/nprot.2016.095]) to evaluate Differential Gene Expression in mouse (one single tissue)- the set up is with 3 or 4 replicates per treatment, comparing treated vs control. We have observed a few issues we are unable ...
rnaseq ballgown stringtie hisat2 written 6 months ago by mnandita0

Latest awards to mnandita

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.2.0
Traffic: 280 users visited in the last hour