User: Hesh

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Hesh0
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University of Washington
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2 days, 11 hours ago
Joined:
3 weeks, 1 day ago
Email:
h*******@uw.edu

Posts by Hesh

<prev • 6 results • page 1 of 1 • next >
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Answer: A: Using HOMER called peaks in DiffBind
... Thanks a lot! ...
written 3 days ago by Hesh0
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Using HOMER called peaks in DiffBind
... Hi,  Can I use HOMER called peaks in DiffBind without making any changes to the peaks file (HOMER output file)?   Thank you   ...
diffbind homer written 6 days ago by Hesh0
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Answer: A: Analyzing data without replicates using DiffBind
... Thank you for the explanation! Appreciate a lot!  ...
written 21 days ago by Hesh0
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Answer: A: Analyzing data without replicates using DiffBind
... Thank  you for the explanation!  Ideally for a good analysis to get statistically significant output, would you use 3 replicates per sample or 2 would be sufficient?  ...
written 22 days ago by Hesh0
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Answer: A: Analyzing data without replicates using DiffBind
... Hi Gord,  Yeah, I get it. Thank you for the quick response.  One more question: I fed the sample sheet with the four peaksets (two histone modifications in WT and NL cells). Then did: me1and2_WTvsNL <- dba.contrast(me1and2_WTvsNL, categories=DBA_CONDITION, minMembers =2) This gave a list of p ...
written 22 days ago by Hesh0
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Analyzing data without replicates using DiffBind
... Hi,  I have a ChIP-seq dataset which contains two histone modifications (me1 and me2), both mapped in WT and mutant cells. I don't have replicates for any of those. Before I do more replicates, I want to test if there are any significant differential binding events between WT and mutant cells for b ...

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