User: daniele.ottaviani

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Posts by daniele.ottaviani

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Comment: C: Increased number of total exons in DEXSeq
... Hi, I have the same problem but no idea on how so solve it. I just thought to take out from the .gtf all isoforms but the one of interest...but this way I'll lose lot of info and the "bin problem" will remain in all other genes anyway. @aditi did you manage to solve the issue then? Thanks in advan ...
written 6 days ago by daniele.ottaviani0
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ASpli ERROR during the counting step
...   Hi, I'm trying to perform diff. splicing analysis and novel exon discovery on my RNAseq data using the ASpli package. I loaded my .bam files with: > bam <- loadBAM(targets) ...but then R gives an error while performing the counting step: > counts <- readCounts ( features, bam, ta ...
rnaseq aspli written 10 months ago by daniele.ottaviani0 • updated 7 months ago by hojka.anna0

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