User: Keith Satterley

gravatar for Keith Satterley
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Posts by Keith Satterley

<prev • 44 results • page 1 of 5 • next >
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Answer: A: AffylmGUI freezes with recent updates of Windows 7 Enterprise Service Pack 1
... Hi Richard, I am working on this very problem the last couple of days and aim to have a fixed version done within 24 hours. I will forward you a fixed version as soon as available and it will soon be corrected on Bioconductor. There have been several issues relating to tcltk problems that Duncan Mu ...
written 4.9 years ago by Keith Satterley450
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Comment: C: affylmGUI/biocReposList() Problem
... I'm currently modifying affylmGUI and replacing biocReposList with biocinstallRepos. Apologies for the mishap. I'll notify as soon as I have tested it, cheers, Keith Satterley affylmGUI maintainer. On 6/07/2012 5:19 PM, Burkhard Heil wrote: > Hi Jin, > > thanks for your help! It's an HuGen ...
written 5.4 years ago by Keith Satterley450
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Comment: C: booklet on using R for biomedical statistics
... I also found it very interesting. Thanks for making it available. cheers, Keith Stijn van Dongen wrote: > For what it's worth, I found it quite interesting. > > On Mon, Dec 13, 2010 at 03:36:52PM -0000, Coghlan, Avril wrote: > >> Dear Vincent, >> >> Sorry about that ...
written 6.9 years ago by Keith Satterley450
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Answer: A: UCSC rtracklayer error "transfer closed with outstanding read data remaining"
... Hi mark, I just tried your commands on my Windows box. Worked fine. I was actually distracted doing something else, but it had finished when I looked back 15 minutes later. knownGene had 66803 elements. I was wondering why you are using hg18 when hg19 is available. my sessionInfo is: R version ...
written 7.0 years ago by Keith Satterley450
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Comment: C: xmapcore get intronic sequence
... Another (non R) site that will provide introns (among other things) between specified co-ords is GABOS(Get A Bit Of Sequence) at: http://bioinf.wehi.edu.au/gabos/ Select genome = hg19, Select Annotation file as ensGene, Select chr17.fa from the drop down list of chromosomes, Enter a sequence range ...
written 7.3 years ago by Keith Satterley450
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Answer: A: problem detected during utilization of LimmaGUI
... Dear Susanna, I don't know how you conclude that flagged spots are not being eliminated. Exactly what have you seen that leads you to this conclusion. What do you expect to see? cheers, Keith ======================== Keith Satterley Bioinformatics Division The Walter and Eliza Hall Institute of ...
written 7.9 years ago by Keith Satterley450
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Answer: A: Windows binary for GEOquery (R 2.10.0)
... Hi Scott, Sean Davis responded to me on Bioc-devel about this problem. However the Bioc-devel archives report his email as " "An embedded and charset-unspecified text was scrubbed..." so I guess that is why google doesn't find it. His response on Nov-25-2009 was: On Mon, Nov 23, 2009 at 6:33 P ...
written 8.0 years ago by Keith Satterley450
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Answer: A: Installing affy package
... Hi Dorothy, I'm not sure about the smootScatter error. Sometimes these sort of things are sorted out by having compatible versions. Have you tried using biocLite? Do the following: source("http://bioconductor.org/biocLite.R") biocLite("affy",dependencies=TRUE) This will ensure you get the correct ...
written 8.0 years ago by Keith Satterley450
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Answer: C: Using Limma for proteomics (2D DIGE) datasets
... Hi Tom, I have checked limmaGUI and I'm not sure why it is not reading your data files correctly when you use the Other format option. I shall look into that later. However, I suggest, as Elmer and Tobias do, that you read the limma Users Guide and use limma at the command line. I have read your da ...
written 8.1 years ago by Keith Satterley450 • updated 2.4 years ago by Gordon Smyth32k
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Answer: A: limmaGUI - venn-diagram & top-table anomaly?
... Hi Danny, I've looked into how these functions were coded. They use different functions to categorize genes, hence the different numbers. The next version of limmaGUI released with R2.10 in October will use similar functions. I will email when the developer version is available that produces matchi ...
written 8.2 years ago by Keith Satterley450

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