User: ahmad.moousavi

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Posts by ahmad.moousavi

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Comment: C: how to make gene cluster from RNA-Seq counts?
... thanks, but I need the code !!, I will found the way. Thanks anyway.   ...
written 5 months ago by ahmad.moousavi0
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Comment: C: how to make gene cluster from RNA-Seq counts?
... Thanks Michael, at last one answered. Would you please share your R code with me? I used to remove low counts by rowSum > 10 is it working too? ...
written 5 months ago by ahmad.moousavi0
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how to make gene cluster from RNA-Seq counts?
... Hi I have several questions and I appreciate for answer : 1- I wanted to know how can I add cluster analysis like below image based on read count.   2- Should I run the code only for the genes with minimum number of reads (e.g rowSum(gene) > 10) or I should run it only for DEGs ? Tnx.   ...
rnaseq deseq2 R written 5 months ago by ahmad.moousavi0 • updated 5 months ago by Michael Love22k
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Problem in working with BiSeq - BSraw
... Hi I wanted to use BiSeq for my RRBS data but I little confused in how to make BSraw object. I have 20 RRBS samples in 7 groups, my genome is Mouse (mm10) and I would like to find all DMR in all chromosomes. Do you have any idea about creating BSraw in default way? because I've tried many times b ...
biseq dna methylation written 14 months ago by ahmad.moousavi0 • updated 14 months ago by Gordon Smyth36k

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