User: martinguerrerog89

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Posts by martinguerrerog89

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Comment: C: Gaia not returning results - load_cnv problem
... Having the same problem here! library(TCGAbiolinks) library(GAIA) project = "TCGA-PRAD" data.category = "Copy Number Variation" data.type = "Masked Copy Number Segment" legacy = FALSE sample.type = c("Primary solid Tumor") datQuery <- GDCquery(project = project, data.category =  data.category ...
written 5 weeks ago by martinguerrerog8920
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Comment: C: Patch for GEOquery package error: getGEO Error in download.file, cannot open des
... You areright @Sean, I did this in the meanwhile to help some co-workers that had the issue too, even after a fresh install of the package, I will write the issue in the GitHub repository and send the pull request, also I have updated the sessionInfo(), my bad! Great package by the way!!   ...
written 8 months ago by martinguerrerog8920
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Tutorial: Patch for GEOquery package error: getGEO Error in download.file, cannot open destfile
... Recently the getGEO function of the package GEOquery suddenly started throwing the following error:   gse=getGEO("GSE106977",GSEMatrix=T) #https://ftp.ncbi.nlm.nih.gov/geo/series/GSE106nnn/GSE106977/matrix/ #OK #Found 2 file(s) #/geo/series/GSE106nnn/GSE106977/ #Error in d ...

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