User: anthony.nash

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Posts by anthony.nash

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Comment: C: GEOquery http:// url error
... Thank you very for that information. It is appreciated.  ...
written 15 months ago by anthony.nash0
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Comment: C: GEOquery http:// url error
... Ah, I see. That's a shame. I'm on 3.3.3 and the comments from the Geo site clearly state: # Version info: R 3.2.3, Biobase 2.30.0, GEOquery 2.40.0, limma 3.26.8 # R scripts generated  Tue Jan 23 03:22:20 EST 2018 However, I do believe you. Unfortunately, I  am 0.1 away from the necessary Mac upgra ...
written 15 months ago by anthony.nash0
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Comment: C: GEOquery http:// url error
... Hi Sam, thanks for replying so quickly.  I went a little further. I closed all session of R and RStudio and doubled checked using top in terminal. Then I decided to keep everything to a bare minimum and ran R from the terminal rather than inside RStudio. Just two lines: library(GEOquery) gset < ...
written 15 months ago by anthony.nash0
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Comment: C: GEOquery http:// url error
... Hi, I am having a similar problem. Interestingly, my package versions are identical. gset <- getGEO("GSE7696", GSEMatrix =TRUE) https://ftp.ncbi.nlm.nih.gov/geo/series/GSE7nnn/GSE7696/matrix/ OK Found 2 file(s) /geo/series/GSE7nnn/GSE7696/ downloaded 0 bytes Error in download.file(sprintf("ht ...
written 15 months ago by anthony.nash0
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GEOquery getGEO 404
... I would appreciate a little help with a GEOquery issue. I've been able to view the gene set of interest on GEO NCBI website (GSE53764), however, the R code required for more in-depth analysis is failing at the first step.  # Version info: R 3.2.3, Biobase 2.30.0, GEOquery 2.40.0, limma 3.26.8 # R ...
geoquery geoquery error message written 15 months ago by anthony.nash0 • updated 15 months ago by Sean Davis21k

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